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pgex-6p-1 vector  (Cytiva Europe)


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    Structured Review

    Cytiva Europe pgex-6p-1 vector
    Pgex 6p 1 Vector, supplied by Cytiva Europe, used in various techniques. Bioz Stars score: 95/100, based on 1244 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pgex+6p/PGEX-6P-1+Vector/custom%4028954648%4042429626
    Average 95 stars, based on 1244 article reviews
    pgex-6p-1 vector - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    High Molecular Weight:

    Article Title: Ferritin Blocks Inhibitory Effects of Two-Chain High Molecular Weight Kininogen (HKa) on Adhesion and Survival Signaling in Endothelial Cells
    Article Snippet: Endotoxin was removed using Detoxi-gel endotoxin removing gel (Thermo Scientific) and quantified using QCL-1000 Quantitative Chromogenic LAL Assay (Lonza). .. cDNA encoding domain 5 of the human high molecular weight kininogen protein (HK5) was subcloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare) in frame with glutathione S-transferase (GST) and recombinant protein was expressed and purified as described . .. Biotinylation of recombinant HFt and LFt was performed using EZ-Link NHS-PEO4-Biotinylation Kit (Pierce) according to the manufacturer's recommendations.

    Expressing:

    Article Title: Ferritin Blocks Inhibitory Effects of Two-Chain High Molecular Weight Kininogen (HKa) on Adhesion and Survival Signaling in Endothelial Cells
    Article Snippet: Endotoxin was removed using Detoxi-gel endotoxin removing gel (Thermo Scientific) and quantified using QCL-1000 Quantitative Chromogenic LAL Assay (Lonza). .. cDNA encoding domain 5 of the human high molecular weight kininogen protein (HK5) was subcloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare) in frame with glutathione S-transferase (GST) and recombinant protein was expressed and purified as described . .. Biotinylation of recombinant HFt and LFt was performed using EZ-Link NHS-PEO4-Biotinylation Kit (Pierce) according to the manufacturer's recommendations.

    Article Title: The Protein Kinase aPKC as Well as the Small GTPases RhoA and Cdc42 Regulates Neutrophil Chemotaxis Partly by Recruiting the ROCK Kinase to the Leading Edge.
    Article Snippet: .. The cDNAs were ligated to the following expression vectors: pEF- BOS (Mizushima and Nagata 1990) or pcDNA3.1(+) (Thermo Fisher Scientific) for expression in mammalian cells; and pGEX- 6P (GE Healthcare Biosciences) for expression as GST- fusion protein in Escherichia coli. ..

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: Kaposi’s Sarcoma-Associated Herpesvirus ORF21 Enhances the Phosphorylation of MEK and the Infectivity of Progeny Virus
    Article Snippet: .. Amplified ORF21 DNA was cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare, Chicago, IL, USA), which had a cleavage site of PreScission protease between GST and the multi-cloning site. ..

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Plasmid Preparation:

    Article Title: Ferritin Blocks Inhibitory Effects of Two-Chain High Molecular Weight Kininogen (HKa) on Adhesion and Survival Signaling in Endothelial Cells
    Article Snippet: Endotoxin was removed using Detoxi-gel endotoxin removing gel (Thermo Scientific) and quantified using QCL-1000 Quantitative Chromogenic LAL Assay (Lonza). .. cDNA encoding domain 5 of the human high molecular weight kininogen protein (HK5) was subcloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare) in frame with glutathione S-transferase (GST) and recombinant protein was expressed and purified as described . .. Biotinylation of recombinant HFt and LFt was performed using EZ-Link NHS-PEO4-Biotinylation Kit (Pierce) according to the manufacturer's recommendations.

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: Kaposi’s Sarcoma-Associated Herpesvirus ORF21 Enhances the Phosphorylation of MEK and the Infectivity of Progeny Virus
    Article Snippet: .. Amplified ORF21 DNA was cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare, Chicago, IL, USA), which had a cleavage site of PreScission protease between GST and the multi-cloning site. ..

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Article Title: Molecular modeling and interaction between Arabidopsis sulfite oxidase and the GW motif of Turnip crinkle virus coat protein.
    Article Snippet: .. 353 354 Plasmid constructs 355 Inserts corresponding to cDNA sequences of TCV CP full length (FL), TCV 356 CP R domain (R), TCV CP S domain (S), TCV CP P domain (P), and TCV CP S and 357 Jo urn al Pr eroo f 20 P domains (SP) were cloned into the EcoRI and XhoI restriction sites of pGEX-6P-1 358 vector (GE Healthcare). .. AtSO full length (FL), AtSO Moco domain (Moco) and AtSO 359 dimerization domain were cloned into the pQE80 vector (Qiagen) according to earlier 360 report (Eilers et al., 2001).

    Recombinant:

    Article Title: Ferritin Blocks Inhibitory Effects of Two-Chain High Molecular Weight Kininogen (HKa) on Adhesion and Survival Signaling in Endothelial Cells
    Article Snippet: Endotoxin was removed using Detoxi-gel endotoxin removing gel (Thermo Scientific) and quantified using QCL-1000 Quantitative Chromogenic LAL Assay (Lonza). .. cDNA encoding domain 5 of the human high molecular weight kininogen protein (HK5) was subcloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare) in frame with glutathione S-transferase (GST) and recombinant protein was expressed and purified as described . .. Biotinylation of recombinant HFt and LFt was performed using EZ-Link NHS-PEO4-Biotinylation Kit (Pierce) according to the manufacturer's recommendations.

    Purification:

    Article Title: Ferritin Blocks Inhibitory Effects of Two-Chain High Molecular Weight Kininogen (HKa) on Adhesion and Survival Signaling in Endothelial Cells
    Article Snippet: Endotoxin was removed using Detoxi-gel endotoxin removing gel (Thermo Scientific) and quantified using QCL-1000 Quantitative Chromogenic LAL Assay (Lonza). .. cDNA encoding domain 5 of the human high molecular weight kininogen protein (HK5) was subcloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare) in frame with glutathione S-transferase (GST) and recombinant protein was expressed and purified as described . .. Biotinylation of recombinant HFt and LFt was performed using EZ-Link NHS-PEO4-Biotinylation Kit (Pierce) according to the manufacturer's recommendations.

    Amplification:

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: Kaposi’s Sarcoma-Associated Herpesvirus ORF21 Enhances the Phosphorylation of MEK and the Infectivity of Progeny Virus
    Article Snippet: .. Amplified ORF21 DNA was cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare, Chicago, IL, USA), which had a cleavage site of PreScission protease between GST and the multi-cloning site. ..

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Polymerase Chain Reaction:

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Clone Assay:

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: Kaposi’s Sarcoma-Associated Herpesvirus ORF21 Enhances the Phosphorylation of MEK and the Infectivity of Progeny Virus
    Article Snippet: .. Amplified ORF21 DNA was cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare, Chicago, IL, USA), which had a cleavage site of PreScission protease between GST and the multi-cloning site. ..

    Article Title: Molecular modeling and interaction between Arabidopsis sulfite oxidase and the GW motif of Turnip crinkle virus coat protein.
    Article Snippet: .. 353 354 Plasmid constructs 355 Inserts corresponding to cDNA sequences of TCV CP full length (FL), TCV 356 CP R domain (R), TCV CP S domain (S), TCV CP P domain (P), and TCV CP S and 357 Jo urn al Pr eroo f 20 P domains (SP) were cloned into the EcoRI and XhoI restriction sites of pGEX-6P-1 358 vector (GE Healthcare). .. AtSO full length (FL), AtSO Moco domain (Moco) and AtSO 359 dimerization domain were cloned into the pQE80 vector (Qiagen) according to earlier 360 report (Eilers et al., 2001).

    Sequencing:

    Article Title: The Identification of a Small Molecule Compound That Reduces HIV-1 Nef-Mediated Viral Infectivity Enhancement
    Article Snippet: .. The cDNA containing the motif was amplified by PCR using the following primers ( 5′-GGATCCGTGGGTTTTCCAGT-3′ and 5′-GTCGACCTATAAAGCTGCCT-3′ ), cloned into the pCR2.1 vector (Invitrogen), sequenced using the BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems) and the ABI PRISM 3100 Genetic Analyzer (Applied Biosystems), and cloned into the pGEX-6P-1 bacterial expression vector (GE Healthcare). .. HEK293 cells (Invitrogen) were maintained in DME medium supplemented with 10% FCS and used as viral producer cells.

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Modification:

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Mutagenesis:

    Article Title: TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development
    Article Snippet: The cDNAs encoding human TMEM25, claudin-1, claudin-2, claudin-4, claudin-15, claudin-25, occludin, and JAM-A were prepared by PCR using Human Multiple Tissue cDNA panels (BD Biosciences); the cDNA for human Par3 was cloned as described previously (Kohjima et al, ). .. The cDNA fragments for various regions of Par3 and TMEM25 (summarized in Fig. ) were amplified by PCR using specific primers and ligated to the indicated expression vector: Par3-PDZ1 (amino acid residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), Par3-PDZ2/3 (residues 408–626), TMEM25-262–366 (residues 262–366), and TMEM25-262–362 (residues 262–362) to pGADGH or pGBK, a modified pGBT vector, for yeast two-hybrid experiments; TMEM25-ECR (residues 27–220), TMEM25-262–366 (residues 262–366), TMEM25-262–362 (residues 262–362), TMEM25-355–366 (residues 355–366), and TMEM25-355–362 (residues 355–362) to pGEX-6P (GE Healthcare Biosciences) for expression as glutathione S -transferase (GST)-fusion protein in Escherichia coli ; TMEM25-ECR (residues 27–220), Par3-PDZ1 (residues 221–321), Par3-PDZ2 (residues 408–510), Par3-PDZ3 (residues 525–626), and Par3-PDZ2/3 (residues 408–626) to pMAL-c2 (New England Biolabs) for expression as protein fused to maltose-binding protein (MBP) in Escherichia coli ; the full-length (FL) of Par3 (residues 1–1,244), claudin-1 (residues 1–211), claudin-2 (residues 1–230), claudin-4 (residues 1–209), claudin-15 (residues 1–228), claudin-25 (residues 1–253), and occludin (residues 1–522) to pEF-BOS or pcDNA3 (Thermo Fisher Scientific) for expression in mammalian cells; and TMEM25-FL (residues 27–366), TMEM25-∆C (residues 27–362), TMEM25-∆ECR (residues 225–366), TMEM25-∆ICR (residues 27–268), JAM-A (residues 28–299), and TM-JAM chimera, a mutant TMEM25 protein with the replacement of its transmembrane segment (residues 238–260) with the corresponding region of JAM-A (residues 238–261), to pCMV-8 (Sigma-Aldrich), pTetOne (Clontech), or pLVSIN-CMV-Neo (Takara Bio), which are modified to contain the signal peptide sequence of preprotrypsin preceding the FLAG-, HA-, or Myc-tags, for expression of N-terminally tagged type I transmembrane proteins. ..

    Construct:

    Article Title: Molecular modeling and interaction between Arabidopsis sulfite oxidase and the GW motif of Turnip crinkle virus coat protein.
    Article Snippet: .. 353 354 Plasmid constructs 355 Inserts corresponding to cDNA sequences of TCV CP full length (FL), TCV 356 CP R domain (R), TCV CP S domain (S), TCV CP P domain (P), and TCV CP S and 357 Jo urn al Pr eroo f 20 P domains (SP) were cloned into the EcoRI and XhoI restriction sites of pGEX-6P-1 358 vector (GE Healthcare). .. AtSO full length (FL), AtSO Moco domain (Moco) and AtSO 359 dimerization domain were cloned into the pQE80 vector (Qiagen) according to earlier 360 report (Eilers et al., 2001).

    Negative Control:

    Article Title: DNA processing by the Kaposi's sarcoma-associated herpesvirus alkaline exonuclease SOX contributes to viral gene expression and infectious virion production.
    Article Snippet: Reactions were conducted under conditions of enzyme excess (250 nM) and fluorescence intensity was measured using a Spark multimode plate reader (TECAN) at 484 nM excitation and 522 nM emission. .. A reaction without enzyme served as a negative control to account for a gradual decrease in fluorescence over time, and a sample with 0.005 nM heat-denatured pGEX-6p (Cytiva) DNA (0.01 nM ssDNA) served as a positive control for ssDNA. ..

    Fluorescence:

    Article Title: DNA processing by the Kaposi's sarcoma-associated herpesvirus alkaline exonuclease SOX contributes to viral gene expression and infectious virion production.
    Article Snippet: Reactions were conducted under conditions of enzyme excess (250 nM) and fluorescence intensity was measured using a Spark multimode plate reader (TECAN) at 484 nM excitation and 522 nM emission. .. A reaction without enzyme served as a negative control to account for a gradual decrease in fluorescence over time, and a sample with 0.005 nM heat-denatured pGEX-6p (Cytiva) DNA (0.01 nM ssDNA) served as a positive control for ssDNA. ..

    Positive Control:

    Article Title: DNA processing by the Kaposi's sarcoma-associated herpesvirus alkaline exonuclease SOX contributes to viral gene expression and infectious virion production.
    Article Snippet: Reactions were conducted under conditions of enzyme excess (250 nM) and fluorescence intensity was measured using a Spark multimode plate reader (TECAN) at 484 nM excitation and 522 nM emission. .. A reaction without enzyme served as a negative control to account for a gradual decrease in fluorescence over time, and a sample with 0.005 nM heat-denatured pGEX-6p (Cytiva) DNA (0.01 nM ssDNA) served as a positive control for ssDNA. ..



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